Publications

Publications authored by Amplicon Express Scientists

A high quality draft consensus sequence of the genome of a heterozygous grapevine variety  2007-12-01

Riccardo Velasco, Andrey Zharkikh, Michela Troggio, Dustin A. Cartwright, Alessandro Cestaro, Dmitry Pruss, Massimo Pindo, Lisa M. FitzGerald, Silvia Vezzulli, Julia Reid, Giulia Malacarne, Diana Iliev, Giuseppina Coppola, Bryan Wardell, Diego Micheletti, Teresita Macalma, Marco Facci, Jeff T. Mitchell, Michele Perazzolli, Glenn Eldredge, Pamela Gatto, Rozan Oyzerski, Marco Moretto, Natalia Gutin, Marco Stefanini, Yang Chen, Cinzia Segala, Christine Davenport, Lorenzo Dematte`, Amy Mraz, Juri Battilana, Keith Stormo, Fabrizio Costa, Quanzhou Tao, Azeddine Si-Ammour, Tim Harkins, Angie Lackey, Clotilde Perbost, Bruce Taillon, Alessandra Stella, Victor Solovyev, Jeffrey A. Fawcett, Lieven Sterck, Klaas Vandepoele, Stella M. Grando, Stefano Toppo, Claudio Moser, Jerry Lanchbury, Robert Bogden, Mark Skolnick, Vittorio Sgaramella, Satish K. Bhatnagar, Paolo Fontana, Alexander Gutin, Yves Van de Peer, Francesco Salamini, Roberto Viola

December 1, 2007

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A sequence-based survey of the complex structural organization of tumor genomes  2008-03-25

Benjamin J Raphael°Ë, Stanislav Volik°Ë, Peng Yu, Chunxiao Wu, Guiqing Huang, Elena V Linardopoulou, Barbara J Trask, Frederic Waldman, Joseph Costello, Kenneth J Pienta, Gordon B Mills, Krystyna Bajsarowicz, Yasuko Kobayashi, Shivaranjani Sridharan, Pamela L Paris, Quanzhou Tao, Sarah J Aerni, Raymond P Brown, Ali Bashir, JoeWGray, Jan-Fang Cheng, Pieter de Jong,

Mikhail Nefedov, Thomas Ried, Hesed M Padilla-Nash and

Colin C Collins

March 25, 2008

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A strong candidate for the breast and ovarian cancer susceptibility gene BRCA1  1994-10-01

Yoshio Miki, Jeff Swensen, Donna Shattuck-Eidens, P. Andrew Futreal, Keith Harshman, Sean Tavtigian, Qingyun Liu, Charles Cochran, L. Michelle Bennett, Wei Ding, Russell Bell, Judith Rosenthal, Charles Hussey, Thanh Tran, Melody McClure, Cheryl Frye, Tom Hattier, Robert Phelps, Astrid Haugen-Strano, Harold Katcher, Kazuko Yakumo, Zahra Gholami, Daniel Shaffer, Steven Stone, Steven Bayer, Christian Wray, Robert Bogden, Priya Dayananth, John Ward, Patricia Tonin, Steven Narod, Pam K. Bristow, Frank H. Norris, Leah Helvering, Paul Morrison, Paul Rosteck, Mei Lai, J. Carl Barrett, Cathryn Lewis, Susan Neuhausen, Lisa Cannon-Albright, David Goldgar, Roger Wiseman, Alexander Kamb, Mark H. Skolnick

October 1994

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A sunflower BAC library suitable for PCR screening and physical mapping of targeted genomic regions  2006-04-27

Mohamed Fouad Bouzidi, Jérôme Franchel, Quanzhou Tao, Keith Stormo, A. Mraz, Paul Nicolas, Saïd Mouzeyar

April 27, 2006

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An evaluation of long-term preservation methods for brown bear (Ursus arctos) faecal DNA samples. Conservation Genetics 3:435-440  2001-11-01

Murphy, M, LP Waits, KC Kendall, S Wasser, J Higbee, R Bogden

November 2002

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Construction of a full bacterial artificial chromosome (BAC) library of Oryza sativa genome  1994

Tao, Quanzhou; Haiying, Zhao; Longfang, Qiu; Guofan, Hong

1994

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Decoding the fine-scale structure of a breast cancer genome and transcriptome  2005-06-07

Volik S, Raphael BJ, Huang G, Stratton MR, Bignel G, Murnane J, Brebner JH, Bajsarowicz K, Paris PL, Quanzhou Tao, Kowbel D, Lapuk A, Shagin DA, Shagina IA, Gray JW, Cheng JF, de Jong PJ, Pevzner P, Collins C.

Jun 7, 2005

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End-sequence profiling: Sequence-based analysis of aberrant genomes  2003-04-23

Stanislav Volik, Shaying Zhao, Koei Chin, John H.Brebner, David R. Herndon, Quanzhou Tao, David Kowbel, Guiqing Huang, Anna Lapuk, Wen-Lin Kuo, Gregg Magrane, Pieter de Jong, Joe W. Gray, and Colin Collins

April 23, 2003

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One large-insert plant-transformation-competent BIBAC library and three BAC libraries of Japonica rice for genome research in rice and other grasses  2002-08-22

Q. Tao · A. Wang · H.B. Zhang

August 22, 2002

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Sequence-based physical mapping of complex genomes by whole genome profiling  2011-02-1

Jan van Oeveren, Marjo de Ruiter, Taco Jesse, Hein van der Poel, Jifeng Tang, Feyruz Yalcin, Antoine Janssen, Hanne Volpin, Keith E. Stormo, Robert Bogden, Michiel J.T. van Eijk and Marcel Prins

February 1, 2011

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The genome of the domesticated apple (Malus x domestica Borkh.)  2010-08-29

Riccardo Velasco, Andrey Zharkikh, Jason Affourtit, Amit Dhingra, Alessandro Cestaro, Ananth Kalyanaraman, Paolo Fontana, Satish K Bhatnagar, Michela Troggio, Dmitry Pruss, Silvio Salvi, Massimo Pindo, Paolo Baldi, Sara Castelletti, Marina Cavaiuolo, Giuseppina Coppola, Fabrizio Costa, Valentina Cova, Antonio Dal Ri, Vadim Goremykin, Matteo Komjanc, Sara Longhi, Pierluigi Magnago, Giulia Malacarne, Mickael Malnoy, Diego Micheletti, Marco Moretto, Michele Perazzolli, Azeddine Si-Ammour, Silvia Vezzulli, Elena Zini, Glenn Eldredge, Lisa M Fitzgerald, Natalia Gutin, Jerry Lanchbury, Teresita Macalma, Jeff T Mitchell, Julia Reid, Bryan Wardell, Chinnappa Kodira, Zhoutao Chen, Brian Desany, Faheem Niazi, Melinda Palmer, Tyson Koepke, Derick Jiwan, Scott Schaeffer, Vandhana Krishnan, Changjun Wu, Vu T Chu, Stephen T King, Jessica Vick, Quanzhou Tao, Amy Mraz, Aimee Stormo, Keith Stormo, Robert Bogden, Davide Ederle, Alessandra Stella, Alberto Vecchietti, Martin M Kater, Simona Masiero, Pauline Lasserre, Yves Lespinasse, Andrew C Allan, Vincent Bus, David Chagné, Ross N Crowhurst, Andrew P Gleave, Enrico Lavezzo, Jeffrey A Fawcett, Sebastian Proost, Pierre Rouzé, Lieven Sterck, Stefano Toppo, Barbara Lazzari, Roger P Hellens, Charles-Eric Durel, Alexander Gutin, Roger E Bumgarner, Susan E Gardiner, Mark Skolnick, Michael Egholm, Yves Van de Peer, Francesco Salamini & Roberto Viola

August 29, 2010

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Amplicon Express in the Media

Dutch Press Release on the Melon Genome  2009-01-01

January 2009

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Feature on Amplicon Express when it was still a budding company  2000-01-01

January 2000

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KeyGene and Amplicon Express announce Whole Genome Profiling, a method that enables fast and efficient Whole Genome Sequencing of plant and animal genomes  2009-01-12

January 12, 2009

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Keygene Offers Sequence-Based Physical Mapping Service to Improve Plant Genome Assemblies  2011-02-01

February 01, 2011

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New technology platforms for molecular breeding: KeyGene's Whole Genome Profiling method  2009-01-01

An interview with Arjen J. van Tunen, CEO of KeyGene NV

January 2009

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Publications Utilizing BAC Library Resources Created by Amplicon Express

A first generation BAC-based physical map of the rainbow trout genome  2009-10-08

Yniv Palti, Ming-Cheng Luo, Yuqin Hu, Carine Genet, Frank M You,Roger L Vallejo, Gary H Thorgaard, Paul A Wheeler and Caird E Rexroad III1

October 8, 2009

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A homozygous frameshift mutation in the mouse Flg gene facilitates enhanced percutaneous allergen priming  2009-05-05

Padraic G Fallon, Takashi Sasaki, Aileen Sandilands, Linda E Campbell, Sean P Saunders, Niamh E Mangan, John J Callanan, Hiroshi Kawasaki, Aiko Shiohama, Akiharu Kubo, John P Sundberg, Richard B Presland, Philip Fleckman, Nobuyoshi Shimizu, Jun Kudoh, Alan D Irvine, Masayuki Amagai, & W H Irwin McLean

MAY 5,2009

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An open-source first- generation molecular genetic map from a sugarbeet x table beet cross and its extension to physical mapping  2007-01-01

J. Mitchell McGrath*, Daniele Trebbi, Ann Fenwick, Lee Panella, Britta Schulz, Valerie Laurent, Steve

Barnes, and Seth C. Murray J.M. McGrath,

January 2007

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Analysis of novel eukaryotic picoplankton at the san pedro ocean time series using a fosmid library  

Amy E. Koid, David A. Caron, John F. Heidelberg and Karla B. Heidelberg

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Geographicisolation, geneticdivergence, and ecological non-exchange ability define ESUs in a threatened sky-island rattlesnake  2007

Andrew T. Holycross, Michael E. Douglas

2007

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Identification and functional analysis of pistil self- incompatibility factor HT-B of Petunia  2009-01-07

Alejandro Raul Puerta, Koichiro Ushijima, Takato Koba, and Hidenori Sassa

January 7, 2009

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Organization and annotation of the Xcat critical region: elimination of seven positional candidate genes  2004-05-05

Kristen M. Huang, Scarlett Geunes-Boyer, Sufen Wu, Amalia Dutra, Jack Favor and Dwight Stambolian

May 5, 2004

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Tracking the origins of the bilaterian Hox patterning system: insights from the acoel flatworm Symsagittifera roscoffensis  2009-10-01

Moreno E, Nadal M, Baguñà J, Martínez P.

October 2009

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